Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs6573485 chr14:24428385 C/T 3.34E-5 503 23.58 21.15 15.53 KM Plot
LGG rs6573486 chr14:24428509 G/A 3.34E-5 503 23.58 21.15 15.53 KM Plot
LGG rs6585852 chr10:86026202 C/T 3.2E-6 508 18.63 24.32 21.6 KM Plot
LGG rs66631678 chr10:910787 A/G 2.44E-10 508 21.77 24.5 13.8 KM Plot
LGG rs667537 chr6:53204545 C/G 4.99E-5 509 22.47 23.33 13.7 KM Plot
LGG rs66943509 chr10:929724 AC/A 9.45E-8 508 21.85 24.15 14.15 KM Plot
LGG rs67076718 chr9:38035758 C/T 0 498 22.58 21.98 1.35 KM Plot
LGG rs6726891 chr2:74389608 C/G 2.75E-5 502 21.85 25.13 11.57 KM Plot
LGG rs6728713 chr2:2584527 G/T 2.68E-7 494 22.85 20.3 7.6 KM Plot
LGG rs6750014 chr2:74391651 T/A 2.87E-5 500 21.83 24.68 11.57 KM Plot
LGG rs6867628 chr5:169024212 T/G 1.59E-8 506 22.12 23.63 6.83 KM Plot
LGG rs6948493 chr7:127586086 C/T 1.3E-5 509 21.7 26.77 14.32 KM Plot
LGG rs6963614 chr7:127594304 C/T 1.61E-5 504 14.32 25.77 21.77 KM Plot
LGG rs6990438 chr8:464571 T/C 2.93E-5 502 23.53 20.3 13.8 KM Plot
LGG rs6998089 chr8:6177853 A/G 1.78E-5 507 22.37 23.82 7.72 KM Plot